PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G160000.5.p
Common NameSETIT_025839mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 1153aa    MW: 127775 Da    PI: 9.4374
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G160000.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.5e-084681340
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                         W+++E e+++ a +++G++ W++Ia  +   Rt  ++
  Seita.8G160000.5.p 46 QWSKDELERFYSAYRKYGKD-WRKIAGAIR-DRTSDMV 81
                        6*****************99.********9.9998665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.93E-104292IPR009057Homeodomain-like
SMARTSM007173.2E-44391IPR001005SANT/Myb domain
PfamPF002491.3E-64686IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-54685IPR009057Homeodomain-like
PROSITE profilePS500906.0174786IPR017877Myb-like domain
CDDcd001671.43E-54789No hitNo description
PfamPF065849.7E-33619719IPR033471DIRP domain
SMARTSM011352.2E-56619720IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1153 aa     Download sequence    Send to blast
MASARKVRNS NKRYAKINDD WKIEDTASVP KSKVRKKKLS DMLGPQWSKD ELERFYSAYR  60
KYGKDWRKIA GAIRDRTSDM VEALYNMNKA YLSLPEGTAT AAGLIAMMTD HYNILDGSNS  120
DHESNDSPKT SRKPQKRGRA KFQSVSKTSD TRYPDQLQSQ PASSSYGCLS LLKKKRSGGN  180
RPRAVGKRTP RVPVASMYHR DERGAPHRQA KPDSNNGDDE GAHVAALALA EVYQRGGSPQ  240
VSQTPGRSGD RMFLSPIKSS DRKNADSEMG SSKLHGFQLD ADYPEASLGS REAETGDYTK  300
GASYLMTNKG SPSGKPQKKV KRSQKRRKKA VRKTGDQFEY DREACSGTEE GHSARKAKEE  360
PELEALGRKT AWPSSTSNKR SRQLFFDDDI SALDALHTLA DLSVNILQPS SVVESESSAQ  420
IKDENKDNDS DGKPSIPAAV SVYEQKDYSK SMAKKLKRQS EIASTDMVTR KKAKLAKDPH  480
HDGSTTSEVK QQACTCGVKT EKKKRKSSTG KVSKDEKNIL KDVEKTEVSA EEGKVSSNKE  540
TTARGATPPQ ADLTSKVKSR RKGGIQKSLT QECKPTEGAD DSGSDKLSYS LSNIIDVKDK  600
LSHCLSSRLL RRWCMFEWFY SAIDYPWFAK SEFVEYLNHV KLGHVPRLTR VEWGVIRSSL  660
GKPRRLSKQF LCEEREKLSQ YRDSVRQHYA ELRSGIREGL PTDLARPLAV GQRVIACHPR  720
TRELHDGNVL TVDDNRCRVQ FDRPELGVEF VMDIDCMPLH PPENFPESLR QQNIVNEYYS  780
RLSEANEDQM KELGNGGGAR FTSNLNGADA TFHIPPGHPI STLMKQAKGD SIDSIAQAKA  840
TVNEVTVATQ QAIYNQPSTL SQIQEREADI RALAELSRAL DKKEALLVEL RHMNEEVSGK  900
QRDGEIIRDL EHFRKQYAMV LVQLRDSNDQ VAGALLSLRQ RNTYHGNPVQ SYPKSMENGI  960
AFAGAPDPYN LFGYINPESG SQVIEVIETS KCRAKMMVDV AIQAMCKVSE GENPFAKIGE  1020
ALDNFNSRGT GSGSSILGIR RIPPDSGQSN ASYQENGTPA PATNNSSRLP NGGNSDGQFP  1080
NELISSCVAM MLMIKNCTEK QYHPAEVAHI LDSALSGLQP CSSQNIPIFR EIEMCMGIIK  1140
NQMLALIPTA SG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316332QKKVKRSQKRRKKAVRK
2319325VKRSQKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703940.10.0PREDICTED: protein ALWAYS EARLY 2 isoform X2
TrEMBLK3ZGY70.0K3ZGY7_SETIT; Uncharacterized protein
STRINGSi025839m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding